Standalone scripts

Shared modules filter, repack and basecall offer standalone scripts for performing IO-intensive actions on POD5 files on shared HPC resource servers. These same scripts are used in our pipelines but are designed to be easily portable for incorporation into any other pipeline.

Find them here:

• https://github.com/wilsontelab/ont-mdi-tools/tree/main/shared/modules

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Table of contents

• Motivation and design
• General usage
• Benchmarking example

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