svAmplicon

The svAmplicon pipeline and app search for structural variants among the molecules representing PCR amplicons.

See the GitHub repository README.md file for additional information: https://github.com/wilsontelab/svx-mdi-tools/blob/main/pipelines/svAmplicon/README.md.

Citation

svAmplicon and its use for SV identification is described in detail here:

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Table of contents

• Stage 1 pipeline
• Stage 2 app

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