svPore

The svPore pipeline and app analyzes long-read, whole-genome sequencing libraries for rare and recurrent structural variants (SV) junctions relative to a reference genome.

Early pipeline actions support file conversion and offline basecalling of Oxford Nanopore long-read data.

Later actions support alignment to a reference genome and SV junction discovery, collation, and inter-molecule comparison. These actions might reasonably be applied to any long read data, but at present have only been applied to nanopore data.

Further documentation is pending.

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